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7Q02

Zn-free structure of lipocalin-like Milk protein, inspired from Diploptera punctata, expressed in Saccharomyces cerevisiae

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 23-ID-D
Synchrotron siteAPS
Beamline23-ID-D
Temperature [K]100
Detector technologyPIXEL
Collection date2021-10-09
DetectorDECTRIS PILATUS 6M
Wavelength(s)1.0332
Spacegroup nameP 21 21 21
Unit cell lengths33.362, 47.692, 97.612
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution48.810 - 1.450
R-factor0.1519
Rwork0.150
R-free0.19450
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4nyq
Data reduction softwareXDS
Data scaling softwareAimless (0.7.7)
Phasing softwarePHENIX
Refinement softwarePHENIX (1.19_4092)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]48.81048.8101.480
High resolution limit [Å]1.4507.8101.450
Rmerge0.1070.0520.771
Rmeas0.1170.0580.853
Rpim0.0460.0250.359
Total number of observations18011512437746
Number of reflections284382361407
<I/σ(I)>10.725.12.1
Completeness [%]100.099.9100
Redundancy6.35.35.5
CC(1/2)0.9970.9980.758
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP4.52900.1 M Sodium Acetate, HCl, pH 4.5; 25 % (w/v) PEG 3350

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PDB entries from 2024-05-15

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