7PVY
Crystal structure of the c-Src SH3 domain E93V-S94A-R95S-T96G mutant
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALBA BEAMLINE XALOC |
Synchrotron site | ALBA |
Beamline | XALOC |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-12-02 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97924 |
Spacegroup name | P 2 21 21 |
Unit cell lengths | 25.975, 41.504, 52.208 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.280 - 1.400 |
R-factor | 0.1991 |
Rwork | 0.198 |
R-free | 0.22470 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4jz4 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.32) |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.1) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 19.280 | 19.280 | 1.420 |
High resolution limit [Å] | 1.400 | 7.670 | 1.400 |
Rmerge | 0.064 | 0.089 | 0.540 |
Rmeas | 0.068 | 0.095 | 0.591 |
Rpim | 0.022 | 0.032 | 0.229 |
Total number of observations | 105356 | 628 | 3536 |
Number of reflections | 11493 | 87 | 552 |
<I/σ(I)> | 16.5 | 28.9 | 2.4 |
Completeness [%] | 98.5 | 91.8 | 96.6 |
Redundancy | 9.2 | 7.2 | 6.4 |
CC(1/2) | 0.997 | 0.990 | 0.956 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 298 | 1.5 M ammonium sulfate, 5% PEG 4000, 0.1M Tris |