7PVW
Crystal structure of the intertwined dimer of the c-Src SH3 domain E93V-S94A-R95S-T96G-N112G-N113Y-T114N-E115H mutant
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALBA BEAMLINE XALOC |
Synchrotron site | ALBA |
Beamline | XALOC |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-03-16 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97926 |
Spacegroup name | P 63 |
Unit cell lengths | 68.037, 68.037, 46.183 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 19.640 - 1.500 |
R-factor | 0.1623 |
Rwork | 0.161 |
R-free | 0.18970 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4le9 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.1) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 19.640 | 19.640 | 1.530 |
High resolution limit [Å] | 1.500 | 8.220 | 1.500 |
Rmerge | 0.042 | 0.029 | 1.008 |
Rmeas | 0.046 | 0.031 | 1.094 |
Rpim | 0.018 | 0.012 | 0.423 |
Total number of observations | 126662 | 718 | 6481 |
Number of reflections | 19622 | 122 | 975 |
<I/σ(I)> | 17.9 | 48.2 | 2.1 |
Completeness [%] | 99.9 | 92.2 | 100 |
Redundancy | 6.5 | 5.9 | 6.6 |
CC(1/2) | 0.999 | 1.000 | 0.838 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4 | 298 | 0.9 M ammonium sulfate, 0.1M Sodium Acetate |