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7PSX

Structure of HOXB13 bound to hydroxymethylated DNA

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID23-1
Synchrotron siteESRF
BeamlineID23-1
Temperature [K]100
Detector technologyCCD
Collection date2018-07-23
DetectorADSC QUANTUM 315r
Wavelength(s)0.97242
Spacegroup nameP 1
Unit cell lengths38.153, 55.541, 101.080
Unit cell angles88.02, 81.46, 84.94
Refinement procedure
Resolution47.000 - 2.000
R-factor0.2608
Rwork0.260
R-free0.28310
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5edn
RMSD bond length0.008
RMSD bond angle1.484
Data reduction softwareXDS
Data scaling softwareAimless (0.7.2)
Phasing softwarePHASER (2.8.2)
Refinement softwareREFMAC (5.8.0258)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]48.85048.8502.020
High resolution limit [Å]1.9709.0501.970
Rmerge0.2840.1625.776
Rmeas0.3260.1846.922
Rpim0.1580.0863.728
Total number of observations222658234010142
Number of reflections557835753147
<I/σ(I)>2.46.40.3
Completeness [%]97.297.177.7
Redundancy44.13.2
CC(1/2)0.9700.9810.074
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.829527% PEG 1000, 8% PEG 200, 0.15M KCl, 0.1M MgCl2, 0.05M Bis-Tris

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