7PFL
The SARS-CoV2 major protease (Mpro) apo structure to 1.8 A resolution
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | MAX IV BEAMLINE BioMAX |
Synchrotron site | MAX IV |
Beamline | BioMAX |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-06-27 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9763 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 114.741, 53.894, 44.731 |
Unit cell angles | 90.00, 101.16, 90.00 |
Refinement procedure
Resolution | 31.760 - 1.800 |
R-factor | 0.1745 |
Rwork | 0.172 |
R-free | 0.21920 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7buy |
Data reduction software | XDS (20200417) |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.18.2) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 34.020 | 34.020 | 1.840 |
High resolution limit [Å] | 1.800 | 9.000 | 1.800 |
Rmerge | 0.097 | 0.067 | 0.718 |
Rmeas | 0.115 | 0.080 | 0.850 |
Rpim | 0.062 | 0.044 | 0.450 |
Total number of observations | 84326 | 621 | 4809 |
Number of reflections | 24173 | 201 | 1389 |
<I/σ(I)> | 7.2 | 15.6 | 1.7 |
Completeness [%] | 97.3 | 94.8 | 96.5 |
Redundancy | 3.5 | 3.1 | 3.5 |
CC(1/2) | 0.990 | 0.989 | 0.569 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 20% w/v PEG 6000 100 mM HEPES pH 7 200 mM ammonium-sulfate |