7P6T
Crystal structure of the FimH-binding decoy module of human glycoprotein 2 (GP2) (crystal form III)
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | ESRF BEAMLINE MASSIF-3 |
| Synchrotron site | ESRF |
| Beamline | MASSIF-3 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2021-05-08 |
| Detector | DECTRIS EIGER X 4M |
| Wavelength(s) | 0.96770 |
| Spacegroup name | C 1 2 1 |
| Unit cell lengths | 90.150, 33.660, 59.630 |
| Unit cell angles | 90.00, 111.84, 90.00 |
Refinement procedure
| Resolution | 28.970 - 1.400 |
| R-factor | 0.1966 |
| Rwork | 0.195 |
| R-free | 0.22360 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | Refined model of crystal form II of the same protein (PDB D_1292117105) |
| RMSD bond length | 0.003 |
| RMSD bond angle | 0.675 |
| Data reduction software | XDS (Feb 5, 2021 BUILT=20210322) |
| Data scaling software | XSCALE (Feb 5, 2021 BUILT=20210322) |
| Phasing software | PHASER (2.8.3) |
| Refinement software | ISOLDE (1.1) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 28.970 | 1.474 |
| High resolution limit [Å] | 1.400 | 1.400 |
| Rmerge | 0.104 | 3.379 |
| Rmeas | 0.112 | 3.663 |
| Rpim | 0.042 | 1.396 |
| Number of reflections | 32721 | 4653 |
| <I/σ(I)> | 8.6 | 0.6 |
| Completeness [%] | 98.4 | 96.84 |
| Redundancy | 6.9 | 6.7 |
| CC(1/2) | 1.000 | 0.485 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 277 | 5% (w/v) PEG 20K, 25% (w/v) 1,1,1-tris(hydroxymethyl) propane, 0.1 M MOPSO/bis-tris pH 6.5, 1% (w/v) NDSB 195, 0.01 M spermine, 0.01 M spermidine, 0.01 M 1,4-diaminobutane, 0.01 M DL-ornithine, 20 mM Na-HEPES pH 7.5, 150 mM NaCl |






