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7P6T

Crystal structure of the FimH-binding decoy module of human glycoprotein 2 (GP2) (crystal form III)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE MASSIF-3
Synchrotron siteESRF
BeamlineMASSIF-3
Temperature [K]100
Detector technologyPIXEL
Collection date2021-05-08
DetectorDECTRIS EIGER X 4M
Wavelength(s)0.96770
Spacegroup nameC 1 2 1
Unit cell lengths90.150, 33.660, 59.630
Unit cell angles90.00, 111.84, 90.00
Refinement procedure
Resolution28.970 - 1.400
R-factor0.1966
Rwork0.195
R-free0.22360
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)Refined model of crystal form II of the same protein (PDB D_1292117105)
RMSD bond length0.003
RMSD bond angle0.675
Data reduction softwareXDS (Feb 5, 2021 BUILT=20210322)
Data scaling softwareXSCALE (Feb 5, 2021 BUILT=20210322)
Phasing softwarePHASER (2.8.3)
Refinement softwareISOLDE (1.1)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]28.9701.474
High resolution limit [Å]1.4001.400
Rmerge0.1043.379
Rmeas0.1123.663
Rpim0.0421.396
Number of reflections327214653
<I/σ(I)>8.60.6
Completeness [%]98.496.84
Redundancy6.96.7
CC(1/2)1.0000.485
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.52775% (w/v) PEG 20K, 25% (w/v) 1,1,1-tris(hydroxymethyl) propane, 0.1 M MOPSO/bis-tris pH 6.5, 1% (w/v) NDSB 195, 0.01 M spermine, 0.01 M spermidine, 0.01 M 1,4-diaminobutane, 0.01 M DL-ornithine, 20 mM Na-HEPES pH 7.5, 150 mM NaCl

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