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7P19

Crystal structure of SARS-CoV-2 RBD Q498Y complexed with human ACE2

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALBA BEAMLINE XALOC
Synchrotron siteALBA
BeamlineXALOC
Temperature [K]100
Detector technologyPIXEL
Collection date2021-03-12
DetectorDECTRIS PILATUS 6M
Wavelength(s)0.97918
Spacegroup nameP 21 21 21
Unit cell lengths60.591, 165.037, 228.678
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution93.990 - 3.240
R-factor0.2338
Rwork0.231
R-free0.28850
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6m0j
RMSD bond length0.002
RMSD bond angle0.493
Data reduction softwareautoPROC (1.0.5)
Data scaling softwareautoPROC (1.0.5)
Phasing softwarePHASER (2.8.3)
Refinement softwarePHENIX (1.19.2_4158)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]133.8253.292
High resolution limit [Å]3.2363.236
Rmerge0.2561.848
Rmeas0.2842.033
Rpim0.1210.838
Number of reflections373981827
<I/σ(I)>7.41.1
Completeness [%]99.499.9
Redundancy5.4
CC(1/2)0.9890.592
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2950.1 M sodium phosphate pH 6.5, 12% w/v PEG 8000

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