7P19
Crystal structure of SARS-CoV-2 RBD Q498Y complexed with human ACE2
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALBA BEAMLINE XALOC |
Synchrotron site | ALBA |
Beamline | XALOC |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-03-12 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97918 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 60.591, 165.037, 228.678 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 93.990 - 3.240 |
R-factor | 0.2338 |
Rwork | 0.231 |
R-free | 0.28850 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6m0j |
RMSD bond length | 0.002 |
RMSD bond angle | 0.493 |
Data reduction software | autoPROC (1.0.5) |
Data scaling software | autoPROC (1.0.5) |
Phasing software | PHASER (2.8.3) |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 133.825 | 3.292 |
High resolution limit [Å] | 3.236 | 3.236 |
Rmerge | 0.256 | 1.848 |
Rmeas | 0.284 | 2.033 |
Rpim | 0.121 | 0.838 |
Number of reflections | 37398 | 1827 |
<I/σ(I)> | 7.4 | 1.1 |
Completeness [%] | 99.4 | 99.9 |
Redundancy | 5.4 | |
CC(1/2) | 0.989 | 0.592 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 295 | 0.1 M sodium phosphate pH 6.5, 12% w/v PEG 8000 |