7OPI
Structure of a minimal SF3B core in complex with the inactive modulator spliceostatin E (form I)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X10SA |
Synchrotron site | SLS |
Beamline | X10SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-08-29 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 1.0 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 104.535, 108.280, 253.202 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.430 - 3.100 |
R-factor | 0.2299 |
Rwork | 0.228 |
R-free | 0.26940 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5ife |
RMSD bond length | 0.003 |
RMSD bond angle | 0.597 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.19_4092) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.780 | 2.970 |
High resolution limit [Å] | 2.900 | 2.900 |
Rmerge | 0.084 | 3.870 |
Rmeas | 0.088 | 4.017 |
Rpim | 0.024 | 1.069 |
Number of reflections | 64378 | 4387 |
<I/σ(I)> | 17.5 | 0.8 |
Completeness [%] | 99.9 | 98.3 |
Redundancy | 13.5 | 13.8 |
CC(1/2) | 1.000 | 0.431 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.15 | 277.15 | 0.1 M Bis-tris propane pH=7.15, 0.2 M KSCN, PEG-3350 11% (w/v), Glycerol (v/v) 10% |