7OMN
Anti-EphA1 JD1-1 VH domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-05-07 |
Detector | DECTRIS PILATUS3 S 2M |
Wavelength(s) | 1.000030 |
Spacegroup name | P 64 |
Unit cell lengths | 131.870, 131.870, 49.679 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 19.839 - 1.700 |
R-factor | 0.2038 |
Rwork | 0.203 |
R-free | 0.22230 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3b9v |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 19.839 | 19.839 | 1.800 |
High resolution limit [Å] | 1.700 | 4.960 | 1.700 |
Rmerge | 0.066 | 0.031 | 0.736 |
Rmeas | 0.068 | 0.032 | 0.811 |
Total number of observations | 810118 | ||
Number of reflections | 51573 | 2260 | 7068 |
<I/σ(I)> | 28.98 | 90.32 | 1.91 |
Completeness [%] | 94.5 | 98.1 | 81.3 |
Redundancy | 15.708 | 18.844 | 5.601 |
CC(1/2) | 1.000 | 1.000 | 0.715 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 277 | 0.2 M NaCl, 1 M K2HPO4 and 0.1 M Imidazole (pH 7) |