7OM7
Thosea asigna virus RdRP domain in complex with RNA and nucleotide UMPNPP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P13 (MX1) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-03-30 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97920 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 67.480, 206.266, 115.590 |
Unit cell angles | 90.00, 90.75, 90.00 |
Refinement procedure
Resolution | 59.090 - 2.400 |
R-factor | 0.2147 |
Rwork | 0.215 |
R-free | 0.21550 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4xhi |
RMSD bond length | 0.010 |
RMSD bond angle | 1.392 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | PHENIX (1.19.2_4158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 59.090 | 2.490 |
High resolution limit [Å] | 2.400 | 2.400 |
Rmerge | 0.131 | 1.717 |
Rmeas | 0.136 | 1.792 |
Rpim | 0.039 | 0.510 |
Number of reflections | 122219 | 12216 |
<I/σ(I)> | 17.25 | |
Completeness [%] | 99.4 | 99.58 |
Redundancy | 12 | |
CC(1/2) | 0.998 | 0.725 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.1M sodium acetate pH4.6, 0.22M (NH4)SO4, 28% PEG2000MME |