7OFP
Apo Structure of Mu2 Adaptin Subunit (Ap50) Of AP2 Clathrin Adaptor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-04-13 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.91587 |
Spacegroup name | P 65 |
Unit cell lengths | 123.830, 123.830, 112.668 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 77.680 - 1.920 |
R-factor | 0.1892 |
Rwork | 0.188 |
R-free | 0.21050 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1bxx |
RMSD bond length | 0.018 |
RMSD bond angle | 1.254 |
Data reduction software | DIALS |
Data scaling software | DIALS |
Phasing software | PHASER |
Refinement software | REFMAC (1.19rc1_4016) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 77.680 | 1.950 |
High resolution limit [Å] | 1.920 | 1.920 |
Rmerge | 0.223 | 6.379 |
Rmeas | 0.230 | 6.664 |
Rpim | 0.055 | 1.912 |
Number of reflections | 74711 | 3642 |
<I/σ(I)> | 13.1 | 1 |
Completeness [%] | 99.9 | 98 |
Redundancy | 17.7 | 12.1 |
CC(1/2) | 0.999 | 0.440 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 289 | Protein (10 mg/ml) and peptide (DVDEEGYSIKPETNQNDTKENHFYSS) (2mg/ml) were equilibrated against 1.5M Ammonium Sulphate 0.1M Hepes pH 7.0. Crystals were cryo-protected by soaking in mother liquor supplemented with 20% glycerol and peptide (peptide did not crystallise). |