7O9Z
Crystal structure of Human Menin in complex with BD-08
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, DESY BEAMLINE P11 |
Synchrotron site | PETRA III, DESY |
Beamline | P11 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-11-30 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.0332 |
Spacegroup name | P 43 2 2 |
Unit cell lengths | 107.193, 107.193, 107.443 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.028 - 1.979 |
R-factor | 0.2129 |
Rwork | 0.211 |
R-free | 0.24350 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5ddc |
RMSD bond length | 0.010 |
RMSD bond angle | 0.950 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHENIX |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.030 | 2.050 |
High resolution limit [Å] | 1.979 | 1.979 |
Rmerge | 0.076 | 0.515 |
Rmeas | 0.080 | 0.538 |
Number of reflections | 44239 | 4358 |
<I/σ(I)> | 19.08 | 3.62 |
Completeness [%] | 99.9 | 99.73 |
Redundancy | 11.7 | 11.5 |
CC(1/2) | 0.998 | 0.942 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 277 | 12% PEG 3350 14% Glycerol |