7O5M
Crystal structure of S-adenosyl-L-homocysteine hydrolase from Synechocystis sp. PCC 6803 cocrystallized with adenosine in the presence of Na+ cations
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.3 |
Synchrotron site | BESSY |
Beamline | 14.3 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-01-15 |
Detector | RAYONIX MX-225 |
Wavelength(s) | 0.89429 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 120.770, 197.130, 82.230 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.270 - 2.200 |
R-factor | 0.1936 |
Rwork | 0.192 |
R-free | 0.24870 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3onf |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.19) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 42.270 | 42.270 | 2.260 |
High resolution limit [Å] | 2.200 | 9.830 | 2.200 |
Rmerge | 0.216 | 0.067 | 0.797 |
Rmeas | 0.243 | 0.076 | 0.936 |
Total number of observations | 205840 | ||
Number of reflections | 46913 | 567 | 2707 |
<I/σ(I)> | 5.92 | 19.7 | 1.32 |
Completeness [%] | 93.3 | 88.3 | 73.4 |
Redundancy | 4.388 | 4.325 | 2.907 |
CC(1/2) | 0.982 | 0.991 | 0.538 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 7.5 | 292 | 0.2MSodium fluoride, 0.1MBis-Tris propane pH 7.5, 20% w/vPEG 3350 |