7NZ7
Crystal structure of mouse ADAT2/ADAT3 tRNA deamination complex 1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06DA |
Synchrotron site | SLS |
Beamline | X06DA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-06-22 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 1.00003 |
Spacegroup name | P 32 2 1 |
Unit cell lengths | 105.471, 105.471, 187.076 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 45.940 - 2.960 |
R-factor | 0.1967 |
Rwork | 0.195 |
R-free | 0.23320 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3dh1 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.065 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHENIX |
Refinement software | PHENIX (1.19rc4_4035) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 3.130 |
High resolution limit [Å] | 2.960 | 2.960 |
Rmerge | 0.092 | 3.820 |
Number of reflections | 25887 | 4112 |
<I/σ(I)> | 26.48 | 1.02 |
Completeness [%] | 99.9 | 99.9 |
Redundancy | 19.7 | 19.7 |
CC(1/2) | 1.000 | 0.550 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 7% (W/V) PEG8000, 0.1 M HEPES pH 7.0, 8% ethylene glycol |