7NUJ
Crystal structure of holo-SwHPA-Mg (hydroxy ketone aldolase) from Sphingomonas wittichii RW1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2) |
Synchrotron site | PETRA III, EMBL c/o DESY |
Beamline | P14 (MX2) |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-03-03 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9766 |
Spacegroup name | H 3 |
Unit cell lengths | 71.102, 71.102, 223.196 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 59.359 - 1.900 |
Rwork | 0.165 |
R-free | 0.20440 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6r62 |
RMSD bond length | 0.008 |
RMSD bond angle | 1.566 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 59.360 | 59.360 | 1.940 |
High resolution limit [Å] | 1.900 | 9.110 | 1.900 |
Rmerge | 0.108 | 0.028 | 1.137 |
Rmeas | 0.135 | 0.035 | 1.413 |
Rpim | 0.080 | 0.021 | 0.823 |
Number of reflections | 33131 | 302 | 2122 |
<I/σ(I)> | 9.5 | ||
Completeness [%] | 99.9 | ||
Redundancy | 5.3 | 5.3 | 5.3 |
CC(1/2) | 0.998 | 0.999 | 0.562 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7 | 277.15 | HEPES, Sodium Citrate |