7N7U
Crystal Structure of SARS-CoV-2 NendoU in complex with LIZA-7
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-07-07 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.91256 |
Spacegroup name | P 63 |
Unit cell lengths | 150.053, 150.053, 110.515 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 64.970 - 2.060 |
R-factor | 0.2232 |
Rwork | 0.222 |
R-free | 0.25430 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6x1b |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 129.642 | 129.642 | 2.097 |
High resolution limit [Å] | 1.960 | 6.082 | 1.969 |
Rmerge | 0.188 | 0.080 | 1.608 |
Rmeas | 0.198 | 0.084 | 1.699 |
Rpim | 0.062 | 0.026 | 0.544 |
Total number of observations | 35148 | 33484 | |
Number of reflections | 100329 | 3466 | 3471 |
<I/σ(I)> | 8.5 | 22.4 | 1.6 |
Completeness [%] | 94.3 | 100 | 73.8 |
Redundancy | 10.2 | 10.1 | 9.6 |
CC(1/2) | 0.994 | 0.990 | 0.538 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 293 | '0.1 M Na3 Citrate pH 5,14% w/v PEG6000 |