7MYH
Ubiquitin variant UbV.k.2 in complex with Ube2k
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX1 |
Synchrotron site | Australian Synchrotron |
Beamline | MX1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-06-25 |
Detector | DECTRIS EIGER2 X 9M |
Wavelength(s) | 0.9537 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 38.841, 76.088, 135.482 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.835 - 2.394 |
R-factor | 0.2084 |
Rwork | 0.206 |
R-free | 0.24870 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5dfl |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 38.835 | 2.480 |
High resolution limit [Å] | 2.390 | 2.390 |
Rmerge | 0.090 | 1.401 |
Rmeas | 0.099 | 1.540 |
Number of reflections | 16440 | 9474 |
<I/σ(I)> | 12.8 | |
Completeness [%] | 99.1 | 97.6 |
Redundancy | 5.5 | 5.8 |
CC(1/2) | 0.999 | 0.551 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 289 | 0.2 M sodium citrate tribasic trihydrate, 0.1 M Bis-Tris propane, pH 7.5, 20% PEG3350 |