7MR5
Crystal structure of the first bromodomain (BD1) of human BRD4 bound to GXH-II-052
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-04-10 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1 |
Spacegroup name | P 1 |
Unit cell lengths | 30.080, 39.710, 57.180 |
Unit cell angles | 99.95, 104.45, 89.99 |
Refinement procedure
Resolution | 29.368 - 1.820 |
R-factor | 0.1618 |
Rwork | 0.159 |
R-free | 0.21180 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3mxf |
RMSD bond length | 0.007 |
RMSD bond angle | 1.045 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.11.1-2575_2829) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 29.368 | 29.368 | 1.870 |
High resolution limit [Å] | 1.820 | 8.000 | 1.820 |
Rmerge | 0.086 | 0.058 | 0.291 |
Rmeas | 0.100 | 0.068 | 0.342 |
Total number of observations | 74812 | ||
Number of reflections | 20285 | 219 | 1500 |
<I/σ(I)> | 10.97 | 15.89 | 5.56 |
Completeness [%] | 89.6 | 88 | 88.8 |
Redundancy | 3.688 | 3.521 | 3.632 |
CC(1/2) | 0.993 | 0.992 | 0.937 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | 0.2 M Lithium sulfate monohydrate, 0.1 M TRIS hydrochloride pH 8.5, 30% w/v Polyethylene glycol 4 000 |