7MNY
Crystal Structure of Nup358/RanBP2 Ran-binding domain 3 in complex with Ran-GPPNHP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-B |
Synchrotron site | APS |
Beamline | 23-ID-B |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-07-18 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.00000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 110.200, 136.031, 158.755 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.930 - 2.700 |
R-factor | 0.2167 |
Rwork | 0.214 |
R-free | 0.26180 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1rrp |
Data reduction software | DIALS |
Data scaling software | xia2 |
Phasing software | PHASER |
Refinement software | PHENIX (1.18.2) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 29.930 | 29.940 | 2.800 |
High resolution limit [Å] | 2.700 | 5.800 | 2.700 |
Rmeas | 0.234 | 0.080 | 1.881 |
Rpim | 0.063 | 0.022 | 0.507 |
Total number of observations | 900779 | 90868 | 88275 |
Number of reflections | 66178 | 6945 | 6497 |
<I/σ(I)> | 8.4 | 18.9 | 1.5 |
Completeness [%] | 100.0 | 100 | 99.8 |
Redundancy | 13.6 | 13.1 | 13.6 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 294 | 20% w/v PEG3350, 0.2 M sodium formate |