7M9F
Structure of the wild-type native full-length HIV-1 capsid protein in complex with ZW-1261
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-02-07 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.00000 |
Spacegroup name | P 6 |
Unit cell lengths | 90.900, 90.900, 56.140 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 45.710 - 2.700 |
R-factor | 0.1728 |
Rwork | 0.169 |
R-free | 0.25330 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4xfz |
RMSD bond length | 0.017 |
RMSD bond angle | 1.893 |
Data reduction software | XDS (Jan 31, 2020) |
Data scaling software | Aimless (0.5.32) |
Phasing software | PHASER (2.7.17) |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 45.710 | 45.710 | 2.770 |
High resolution limit [Å] | 2.700 | 12.080 | 2.700 |
Rmerge | 0.108 | 0.058 | 0.768 |
Rmeas | 0.118 | 0.062 | 0.840 |
Total number of observations | 52178 | ||
Number of reflections | 7239 | 69 | 502 |
<I/σ(I)> | 13.62 | 33.7 | 3.39 |
Completeness [%] | 97.9 | 73.4 | 91.1 |
Redundancy | 7.208 | 7.928 | 6.064 |
CC(1/2) | 0.996 | 0.999 | 0.783 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 291 | PEG 3350, NaI, Sodium Cacodylate, Glycerol |