7LO4
SARS-CoV-2 spike receptor-binding domain with a G485R mutation in complex with human ACE2
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-11-18 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9537 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 65.606, 112.176, 145.989 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.790 - 2.465 |
R-factor | 0.1957 |
Rwork | 0.193 |
R-free | 0.25140 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6lzg |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.4) |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.794 | 2.570 |
High resolution limit [Å] | 2.460 | 2.460 |
Rmerge | 0.162 | 0.858 |
Rmeas | 0.167 | 0.885 |
Rpim | 0.042 | 0.216 |
Number of reflections | 39644 | 4318 |
<I/σ(I)> | 14.1 | 3.5 |
Completeness [%] | 99.7 | 97.8 |
Redundancy | 15.9 | 16.2 |
CC(1/2) | 0.997 | 0.887 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293 | Protein: 5 mg/mL in 20 mM Tris pH 7.5, 150 mM NaCl Reservoir: 0.1 M HEPES pH 7.0, 16% w/v PEG 8000 Cryobuffer: reservoir solution + 20% ethylene glycol |