7LDA
Crystal structure of a ribose-5-phosphate isomerase from Stenotrophomonas maltophilia K279a
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-F |
Synchrotron site | APS |
Beamline | 21-ID-F |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2020-02-27 |
Detector | RAYONIX MX-300 |
Wavelength(s) | 0.9787 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 97.410, 97.410, 129.280 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.580 - 1.450 |
R-factor | 0.1495 |
Rwork | 0.149 |
R-free | 0.16310 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3enq |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MOLREP |
Refinement software | PHENIX (1.19rc4-4035) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 45.580 | 45.580 | 1.490 |
High resolution limit [Å] | 1.450 | 6.480 | 1.450 |
Rmerge | 0.063 | 0.029 | 0.601 |
Rmeas | 0.067 | 0.031 | 0.637 |
Total number of observations | 1011070 | ||
Number of reflections | 110116 | 1370 | 8042 |
<I/σ(I)> | 19.16 | 42.42 | 3.62 |
Completeness [%] | 99.9 | 97.6 | 100 |
Redundancy | 9.182 | 8.358 | 9.263 |
CC(1/2) | 0.999 | 0.999 | 0.899 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 287 | StmaA.00944.a.B1.PW38722 at 29.2 mg/mL against MCSG1 screen condition G5: 0.1 M BisTris HCl pH6.5, 2.0M ammonium sulfate supplemented with 25% ethylene glycol as cryo, unique puck ID xqs9-4, 313871g5 |