7LAY
Crystal structure of the first bromodomain (BD1) of human BRD3 bound to SG3-179
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-03-28 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.000 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 48.007, 61.643, 93.732 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.729 - 1.450 |
R-factor | 0.1664 |
Rwork | 0.166 |
R-free | 0.18840 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3nxb |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 100.000 | 100.000 | 1.480 |
High resolution limit [Å] | 1.450 | 3.940 | 1.450 |
Rmerge | 0.097 | 0.056 | 0.354 |
Rmeas | 0.107 | 0.061 | 0.447 |
Rpim | 0.045 | 0.023 | 0.268 |
Total number of observations | 185069 | ||
Number of reflections | 49274 | 2718 | 2258 |
<I/σ(I)> | 20.5 | ||
Completeness [%] | 98.3 | 99.8 | 92.2 |
Redundancy | 3.8 | 6.7 | 2.6 |
CC(1/2) | 0.994 | 0.821 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 292 | 0.2 M Ammonium sulfate, 0.1 M BIS-TRIS pH 5.5, 25 % w/v Polyethylene glycol 3,350 |