7L9L
Crystal structure of the second bromodomain (BD2) of human BRD3 bound to BI2536
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2019-01-10 |
Detector | RIGAKU SATURN 944+ |
Wavelength(s) | 1.5417 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 55.190, 63.470, 40.000 |
Unit cell angles | 90.00, 109.55, 90.00 |
Refinement procedure
Resolution | 37.694 - 1.550 |
R-factor | 0.1512 |
Rwork | 0.150 |
R-free | 0.17770 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7l72 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 37.694 | 37.694 | 1.590 |
High resolution limit [Å] | 1.550 | 6.930 | 1.550 |
Rmerge | 0.018 | 0.020 | 0.043 |
Rmeas | 0.022 | 0.025 | 0.060 |
Total number of observations | 39475 | ||
Number of reflections | 18648 | 213 | 1308 |
<I/σ(I)> | 31.39 | 61.4 | 10.7 |
Completeness [%] | 98.5 | 94.2 | 97 |
Redundancy | 2.117 | 3.31 | 1.334 |
CC(1/2) | 1.000 | 0.999 | 0.994 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.1 M HEPES pH 7.5, 10 % w/v Polyethylene glycol 6,000, 5 % v/v (+/-)-2-Methyl-2,4-pentanediol |