7KXC
The aminoacrylate form of the wild-type Salmonella typhimurium Tryptophan Synthase in complex with inhibitor N-(4'-trifluoromethoxybenzenesulfonyl)-2-amino-1-ethylphosphate (F9F) at the enzyme alpha-site, sodium ion at the metal coordination site and benzimidazole (BZI) at the enzyme beta-site at 1.30 Angstrom resolution. One of the beta-Q114 rotamer conformations allows a hydrogen bond to form with the PLP oxygen at the position 3 in the ring
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-03-15 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.00000 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 184.130, 59.359, 67.477 |
Unit cell angles | 90.00, 95.16, 90.00 |
Refinement procedure
Resolution | 39.570 - 1.510 |
R-factor | 0.1998 |
Rwork | 0.198 |
R-free | 0.23070 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4ht3 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.681 |
Data reduction software | xia2 (0.5.902) |
Data scaling software | SCALA (3.3.22) |
Phasing software | MOLREP (11.7.02) |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 91.691 | 39.566 | 1.590 |
High resolution limit [Å] | 1.509 | 4.780 | 1.510 |
Rmerge | 0.098 | 0.039 | 0.550 |
Rmeas | 0.111 | 0.044 | 0.661 |
Rpim | 0.035 | 0.014 | 0.250 |
Total number of observations | 37293 | 112970 | |
Number of reflections | 112796 | 3721 | 16185 |
<I/σ(I)> | 10.4 | 28.6 | 2.2 |
Completeness [%] | 99.2 | 99.4 | 98.3 |
Redundancy | 9.8 | 10 | 7 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.8 | 298 | 50 mM Bicine-CsOH, 9% PEG 8,000, 2 mM Spermine, pH 7.8 |