7KWA
Structure of DCN1 bound to N-((4S,5S)-3-(aminomethyl)-7-ethyl-4-(4-fluorophenyl)-6-oxo-1-phenyl-4,5,6,7-tetrahydro-1H-pyrazolo[3,4-b]pyridin-5-yl)-3-(trifluoromethyl)benzamide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-03-05 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9786 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 35.233, 97.057, 59.837 |
Unit cell angles | 90.00, 106.11, 90.00 |
Refinement procedure
Resolution | 37.082 - 1.572 |
R-factor | 0.1714 |
Rwork | 0.170 |
R-free | 0.20950 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5v86 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.630 |
High resolution limit [Å] | 1.570 | 3.380 | 1.570 |
Rmerge | 0.050 | 0.029 | 0.349 |
Rmeas | 0.059 | 0.035 | 0.414 |
Rpim | 0.031 | 0.019 | 0.219 |
Total number of observations | 170711 | ||
Number of reflections | 49253 | 4915 | 4515 |
<I/σ(I)> | 9 | ||
Completeness [%] | 91.7 | 89.9 | 84.7 |
Redundancy | 3.5 | 3.3 | 3.2 |
CC(1/2) | 0.998 | 0.915 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 277 | 6% PEG3350, 0.2M NH4Br |