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7KPF

NME2 bound to myristoyl-CoA

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 24-ID-E
Synchrotron siteAPS
Beamline24-ID-E
Temperature [K]100
Detector technologyPIXEL
Collection date2017-10-11
DetectorDECTRIS PILATUS 300K
Wavelength(s)0.97911
Spacegroup nameP 21 21 21
Unit cell lengths84.727, 107.515, 115.080
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution78.560 - 2.230
Rwork0.190
R-free0.22910
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3bbf
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX (1.13-2998-0000)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]115.080115.0802.250
High resolution limit [Å]2.1809.2602.180
Rmerge0.1030.030
Rmeas0.1110.033
Rpim0.0410.013
Total number of observations375490498113826
Number of reflections523278052139
<I/σ(I)>13.246.2
Completeness [%]94.796.847.6
Redundancy7.26.26.5
CC(1/2)0.9980.9980.597
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION7.5293The 2 mM NME2 protein (in 30 mM HEPES pH 8, 1 mM EDTA, 1 mM DTT) was mixed at a 1:1.1 ratio with 2 mM myristoyl-CoA in water and incubated on ice for 15 min. crystallized by vapor diffusion at 20 degrees C with a well solution of 10% PEG-4000, 100 mM MgCl2, 100 mM HEPES pH 7.5 and a protein-to-well drop ratio of 1:1

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PDB entries from 2024-05-15

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