7KKV
Crystal structure of Bacillus halodurans OapB in complex with its OLE RNA target (native, crystal form I)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2020-09-27 |
Detector | DECTRIS EIGER2 X 16M |
Wavelength(s) | 0.97911 |
Spacegroup name | H 3 2 |
Unit cell lengths | 98.947, 98.947, 197.852 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 41.875 - 2.000 |
R-factor | 0.1703 |
Rwork | 0.169 |
R-free | 0.18800 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7k9d |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.32) |
Phasing software | PHENIX (1.16_3549) |
Refinement software | PHENIX (1.16_3549) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 42.840 | 42.840 | 2.000 |
High resolution limit [Å] | 1.950 | 8.930 | 1.950 |
Rmerge | 0.029 | 0.020 | 1.710 |
Rmeas | 0.033 | 0.023 | 1.922 |
Rpim | 0.015 | 0.012 | 0.867 |
Total number of observations | 123752 | 1284 | 8739 |
Number of reflections | 27246 | 315 | 1855 |
<I/σ(I)> | 20.5 | 65.7 | 1 |
Completeness [%] | 99.1 | 95.7 | 96.9 |
Redundancy | 4.5 | 4.1 | 4.7 |
CC(1/2) | 1.000 | 0.999 | 0.490 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 292 | 100 mM HEPES (pH 7.0 to 7.5), 200 mM NH4Cl and 39 to 42.5% 2-Methyl-2,4-pentanediol (MPD) |