7KHH
Ternary complex of VHL/BRD4-BD1/Compound9 (4-(3,5-difluoropyridin-2-yl)-N-(11-(((S)-1-((2S,4R)-4-hydroxy-2-((4-(4-methylthiazol-5-yl)benzyl)carbamoyl)pyrrolidin-1-yl)-3,3-dimethyl-1-oxobutan-2-yl)amino)-11-oxoundecyl)-10-methyl-7-((methylsulfonyl)methyl)-11-oxo-3,4,10,11-tetrahydro-1H-1,4,10-triazadibenzo[cd,f]azulene-6-carboxamide)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-D |
Synchrotron site | APS |
Beamline | 21-ID-D |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-11-04 |
Detector | DECTRIS PILATUS 2M |
Wavelength(s) | 1.07822 |
Spacegroup name | P 31 2 1 |
Unit cell lengths | 78.979, 78.979, 195.399 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 68.380 - 2.281 |
R-factor | 0.1801 |
Rwork | 0.178 |
R-free | 0.22880 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5t35 |
RMSD bond length | 0.008 |
RMSD bond angle | 0.970 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | BUSTER |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 68.398 | 2.475 |
High resolution limit [Å] | 2.278 | 2.278 |
Rmerge | 0.174 | 1.790 |
Rpim | 0.040 | 0.499 |
Number of reflections | 478991 | 16514 |
<I/σ(I)> | 15.3 | |
Completeness [%] | 92.7 | 71.1 |
Redundancy | 19.7 | 13.6 |
CC(1/2) | 0.998 | 0.537 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 8 | 291 | 18% w/v PEG 8K, 10% v/v PEG 200, 0.1 M BIS-TRIS propane pH 9.0 |