7KEF
RNA polymerase II elongation complex with unnatural base dTPT3, rNaM in swing state
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.2.1 |
Synchrotron site | ALS |
Beamline | 8.2.1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2019-04-28 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 1.0 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 167.713, 221.711, 193.255 |
Unit cell angles | 90.00, 101.78, 90.00 |
Refinement procedure
Resolution | 48.700 - 3.890 |
R-factor | 0.2701 |
Rwork | 0.268 |
R-free | 0.32550 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2e2j |
Data reduction software | MOSFLM |
Data scaling software | Aimless (0.7.3) |
Phasing software | PHASER |
Refinement software | PHENIX (1.13) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.701 | 3.990 |
High resolution limit [Å] | 3.890 | 3.890 |
Rmerge | 1.008 | 5.216 |
Rmeas | 1.085 | 5.607 |
Rpim | 0.400 | 2.049 |
Total number of observations | 33419 | |
Number of reflections | 63384 | 4484 |
<I/σ(I)> | 2.5 | 0.4 |
Completeness [%] | 99.9 | 99.9 |
Redundancy | 7.4 | 7.5 |
CC(1/2) | 0.904 | 0.296 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 298 | 390mM (NH4)2HPO4/NaH2PO4, pH 6.5, 5mM dioxane, 5mM DTT, 10-12% PEG6000 |