7K93
DENV2 NS1 in complex with neutralizing 2B7 single chain Fab variable region (scFv)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-B |
Synchrotron site | APS |
Beamline | 23-ID-B |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-12-14 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.0332 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 69.627, 165.593, 258.589 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.380 - 2.890 |
R-factor | 0.2244 |
Rwork | 0.223 |
R-free | 0.26860 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6ewq |
RMSD bond length | 0.010 |
RMSD bond angle | 1.199 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 47.380 | 2.994 |
High resolution limit [Å] | 2.890 | 2.890 |
Rmerge | 0.198 | 2.319 |
Rmeas | 0.206 | 2.411 |
Rpim | 0.057 | 0.653 |
Number of reflections | 67710 | 6307 |
<I/σ(I)> | 11.4 | 1.18 |
Completeness [%] | 99.3 | |
Redundancy | 13.2 | |
CC(1/2) | 0.998 | 0.532 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8.5 | 293 | 50 mM Tris pH 8.5, 50 mM (NH4)2SO4, 10% (v/v) glycerol |