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7K7R

EBNA1 peptide AA386-405 with Fab MS39p2w174

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRL BEAMLINE BL12-2
Synchrotron siteSSRL
BeamlineBL12-2
Temperature [K]100
Detector technologyPIXEL
Collection date2020-05-15
DetectorDECTRIS PILATUS3 X 6M
Wavelength(s)0.97946
Spacegroup nameI 2 2 2
Unit cell lengths119.657, 137.562, 178.996
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution45.140 - 2.500
R-factor0.2131
Rwork0.211
R-free0.25220
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)4lri
Data reduction softwareXDS (20200131)
Data scaling softwareAimless (3.3.22)
Phasing softwarePHASER (2.8.3)
Refinement softwarePHENIX (1.18.2_3874)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]45.14045.1402.240
High resolution limit [Å]2.19010.7302.190
Rmerge0.1560.0245.921
Rmeas0.1860.0297.776
Rpim0.1010.0164.972
Total number of observations23161220587430
Number of reflections512336713637
<I/σ(I)>5.531.70.1
Completeness [%]96.194.678
Redundancy3.23.12
CC(1/2)0.9950.9990.126
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.9294Fab (15 mg/ml) mixed with peptide at a 1:7.5 molar ratio. 0.48M Sodium Citrate, 0.72M Sodium/Potassium Phosphate, 3% MPD (v/v), 0.1M HEPES, pH 6.9.

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PDB entries from 2024-05-15

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