7K5L
Ebola virus VP40 octameric ring generated by an RNA oligonucleotide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 31-ID |
Synchrotron site | APS |
Beamline | 31-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-10-17 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.97931 |
Spacegroup name | P 4 2 2 |
Unit cell lengths | 80.626, 80.626, 47.083 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 23.540 - 1.380 |
R-factor | 0.181 |
Rwork | 0.180 |
R-free | 0.19700 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4ldm |
RMSD bond length | 0.005 |
RMSD bond angle | 0.784 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.18_3845) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 80.630 | 1.410 |
High resolution limit [Å] | 1.380 | 1.380 |
Rmerge | 0.059 | 1.519 |
Number of reflections | 30977 | 1580 |
<I/σ(I)> | 27.8 | 2.4 |
Completeness [%] | 95.7 | 100 |
Redundancy | 24.8 | 25.7 |
CC(1/2) | 0.999 | 0.853 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.4 | 293 | 1 uL 3.5 mg/mL protein, 1 uL 75 mM sodium citrate tribasic pH 8.4, 150 mM ammonium acetate |