7K5D
Ebola virus VP40 octameric ring generated by a DNA oligonucleotide
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | SSRL BEAMLINE BL12-2 |
| Synchrotron site | SSRL |
| Beamline | BL12-2 |
| Temperature [K] | 100.5 |
| Detector technology | PIXEL |
| Collection date | 2019-04-17 |
| Detector | DECTRIS PILATUS 6M |
| Wavelength(s) | 0.97946 |
| Spacegroup name | P 4 2 2 |
| Unit cell lengths | 80.438, 80.438, 47.281 |
| Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
| Resolution | 40.760 - 1.780 |
| R-factor | 0.1827 |
| Rwork | 0.182 |
| R-free | 0.19810 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 4ldm |
| RMSD bond length | 0.007 |
| RMSD bond angle | 0.929 |
| Data reduction software | XDS |
| Data scaling software | Aimless |
| Phasing software | PHASER |
| Refinement software | PHENIX (1.18_3845) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 40.760 | 1.820 |
| High resolution limit [Å] | 1.780 | 1.780 |
| Rmerge | 0.098 | 1.411 |
| Number of reflections | 15385 | 844 |
| <I/σ(I)> | 15.5 | 2.4 |
| Completeness [%] | 99.9 | 98.8 |
| Redundancy | 12.3 | 11.8 |
| CC(1/2) | 0.998 | 0.874 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 6.6 | 293 | 1 uL 3.5 mg/mL protein, 1 uL 75 mM sodium citrate tribasic pH 6.6, 150 mM ammonium acetate |






