7K5D
Ebola virus VP40 octameric ring generated by a DNA oligonucleotide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100.5 |
Detector technology | PIXEL |
Collection date | 2019-04-17 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97946 |
Spacegroup name | P 4 2 2 |
Unit cell lengths | 80.438, 80.438, 47.281 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 40.760 - 1.780 |
R-factor | 0.1827 |
Rwork | 0.182 |
R-free | 0.19810 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4ldm |
RMSD bond length | 0.007 |
RMSD bond angle | 0.929 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.18_3845) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.760 | 1.820 |
High resolution limit [Å] | 1.780 | 1.780 |
Rmerge | 0.098 | 1.411 |
Number of reflections | 15385 | 844 |
<I/σ(I)> | 15.5 | 2.4 |
Completeness [%] | 99.9 | 98.8 |
Redundancy | 12.3 | 11.8 |
CC(1/2) | 0.998 | 0.874 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.6 | 293 | 1 uL 3.5 mg/mL protein, 1 uL 75 mM sodium citrate tribasic pH 6.6, 150 mM ammonium acetate |