7JUC

C-type carbohydrate-recognition domain 4 of the mannose receptor complexed with methyl-mannoside

Experimental procedure

Experimental method	SINGLE WAVELENGTH
Source type	SYNCHROTRON
Source details	SSRL BEAMLINE BL12-2
Synchrotron site	SSRL
Beamline	BL12-2
Temperature [K]	100
Detector technology	PIXEL
Collection date	2019-11-20
Detector	DECTRIS PILATUS3 6M
Wavelength(s)	0.97946
Spacegroup name	P 1 21 1
Unit cell lengths	34.268, 54.005, 35.525
Unit cell angles	90.00, 95.86, 90.00

Refinement procedure

Resolution	29.570 - 1.400
R-factor	0.1366
Rwork	0.135
R-free	0.16010
Structure solution method	MOLECULAR REPLACEMENT
Starting model (for MR)	partially refined model in different symmetry
Data reduction software	XDS
Data scaling software	Aimless (0.7.4)
Phasing software	PHENIX
Refinement software	PHENIX (1.15.2_3472)

Data quality characteristics

	Overall	Inner shell	Outer shell
Low resolution limit [Å]	35.340	35.340	1.420
High resolution limit [Å]	1.400	7.660	1.400
Rmerge	0.047	0.061	0.082
Rmeas	0.051	0.066	0.089
Rpim	0.019	0.024	0.034
Total number of observations		1210	8059
Number of reflections	25015	173	1233
<I/σ(I)>	22	36.5	10.3
Completeness [%]	98.0	99.4	94.6
Redundancy	6.9	7	6.5
CC(1/2)	0.999	0.996	0.995

Crystallization Conditions

crystal ID	method	pH	temperature	details
1	VAPOR DIFFUSION, HANGING DROP		295	Protein solution: 6.0mg/ml protein in 5mM CaCl2, 10mM Tris, pH 8.0, 25mM NaCl, and 50mM Me-Man Reservoir solution: 10% Peg 400, 0.1M Mes pH=6.0