7JMQ
The external aldimine form of the mutant beta-S377A Salmonella thypi tryptophan synthase in open conformation showing dual side chain conformations for the residue beta-Q114, sodium ion at the metal coordination site, and F9 inhibitor at the alpha-site. One of the beta-Q114 rotamer conformations allows a hydrogen bond to form with the PLP oxygen at the position 3 in the ring
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2019-12-07 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.5418 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 181.380, 58.244, 67.154 |
Unit cell angles | 90.00, 94.33, 90.00 |
Refinement procedure
Resolution | 38.860 - 1.600 |
R-factor | 0.1593 |
Rwork | 0.158 |
R-free | 0.18360 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6c73 |
RMSD bond length | 0.007 |
RMSD bond angle | 1.523 |
Data reduction software | xia2 |
Data scaling software | SCALA (3.3.22) |
Phasing software | MOLREP (11.7.02) |
Refinement software | REFMAC (5.8.0258) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 90.431 | 38.858 | 1.690 |
High resolution limit [Å] | 1.599 | 5.060 | 1.600 |
Rmerge | 0.043 | 0.031 | 0.132 |
Rmeas | 0.065 | 0.051 | 0.179 |
Rpim | 0.036 | 0.029 | 0.101 |
Total number of observations | 9150 | 31090 | |
Number of reflections | 85831 | 3016 | 10609 |
<I/σ(I)> | 12.8 | 19.3 | 6.1 |
Completeness [%] | 93.2 | 99.1 | 79.4 |
Redundancy | 3.1 | 3 | 2.9 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.6 | 298 | 50 mM Bicine-CsOH, 8% PEG 8,000, 6 mM Spermine, pH 7.6 |