7JM5
Crystal structure of KDM4B in complex with QC6352
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-11-19 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.0 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 59.825, 97.107, 80.068 |
Unit cell angles | 90.00, 106.52, 90.00 |
Refinement procedure
Resolution | 41.030 - 2.700 |
R-factor | 0.198 |
Rwork | 0.196 |
R-free | 0.24370 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4lxl |
RMSD bond length | 0.002 |
RMSD bond angle | 0.476 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.760 |
High resolution limit [Å] | 2.700 | 2.700 |
Rmerge | 0.125 | 0.763 |
Rpim | 0.051 | 0.340 |
Number of reflections | 24351 | 1435 |
<I/σ(I)> | 16.5 | 1.6 |
Completeness [%] | 99.2 | 93.4 |
Redundancy | 6.6 | 5.4 |
CC(1/2) | 0.993 | 0.867 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | tri-sodium citrate, PEG 3350 |