7JIH
HRAS A59E GppNHp
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 173.15 |
Detector technology | IMAGE PLATE |
Collection date | 2019-03-21 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.54178 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 55.675, 49.832, 57.320 |
Unit cell angles | 90.00, 117.81, 90.00 |
Refinement procedure
Resolution | 29.170 - 1.989 |
R-factor | 0.202 |
Rwork | 0.196 |
R-free | 0.25420 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3k8y |
RMSD bond length | 0.007 |
RMSD bond angle | 1.000 |
Data reduction software | HKL-3000 |
Phasing software | PHENIX (1.11.1-2575) |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.020 |
High resolution limit [Å] | 1.989 | 5.400 | 1.989 |
Rmerge | 0.083 | 0.060 | 0.598 |
Rmeas | 0.098 | 0.073 | 0.801 |
Rpim | 0.051 | 0.039 | 0.526 |
Number of reflections | 15450 | 998 | 63 |
<I/σ(I)> | 6.6 | ||
Completeness [%] | 80.2 | 98.4 | 6.7 |
Redundancy | 3.3 | 3.5 | 1.4 |
CC(1/2) | 0.995 | 0.597 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 291.15 | Starting concentration of HRAS A59T GppNHp was 18.1mg/mL in buffer containing 20mM HEPES, 50mM NaCl, 20mM MgCl2 and 1mM DTT at pH 7.5. Used a 24-well plate sealed with Vaseline and total well volumes of 0.402mL. Hanging drops were 0.001mL mother liquor to 0.001mL protein. Mother liquor contained 2.6mM NaCl, 1mM MgCl2, 15.7mM HEPES (pH7.5), 2.5mM DTT, 9.95mM Ca(OAc)2, and 19.9% PEG 3350. |