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7JIH

HRAS A59E GppNHp

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007 HF
Temperature [K]173.15
Detector technologyIMAGE PLATE
Collection date2019-03-21
DetectorRIGAKU RAXIS IV++
Wavelength(s)1.54178
Spacegroup nameP 1 21 1
Unit cell lengths55.675, 49.832, 57.320
Unit cell angles90.00, 117.81, 90.00
Refinement procedure
Resolution29.170 - 1.989
R-factor0.202
Rwork0.196
R-free0.25420
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3k8y
RMSD bond length0.007
RMSD bond angle1.000
Data reduction softwareHKL-3000
Phasing softwarePHENIX (1.11.1-2575)
Refinement softwarePHENIX (1.11.1_2575)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0002.020
High resolution limit [Å]1.9895.4001.989
Rmerge0.0830.0600.598
Rmeas0.0980.0730.801
Rpim0.0510.0390.526
Number of reflections1545099863
<I/σ(I)>6.6
Completeness [%]80.298.46.7
Redundancy3.33.51.4
CC(1/2)0.9950.597
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP7.5291.15Starting concentration of HRAS A59T GppNHp was 18.1mg/mL in buffer containing 20mM HEPES, 50mM NaCl, 20mM MgCl2 and 1mM DTT at pH 7.5. Used a 24-well plate sealed with Vaseline and total well volumes of 0.402mL. Hanging drops were 0.001mL mother liquor to 0.001mL protein. Mother liquor contained 2.6mM NaCl, 1mM MgCl2, 15.7mM HEPES (pH7.5), 2.5mM DTT, 9.95mM Ca(OAc)2, and 19.9% PEG 3350.

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PDB entries from 2024-05-15

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