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7JH6

De novo designed two-domain di-Zn(II) and porphyrin-binding protein

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 8.3.1
Synchrotron siteALS
Beamline8.3.1
Temperature [K]100
Detector technologyPIXEL
Collection date2018-01-20
DetectorDECTRIS PILATUS3 6M
Wavelength(s)1.11583
Spacegroup nameC 1 2 1
Unit cell lengths172.478, 27.825, 188.494
Unit cell angles90.00, 117.16, 90.00
Refinement procedure
Resolution86.240 - 3.500
R-factor0.26167
Rwork0.261
R-free0.28319
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)Designed model
RMSD bond length0.005
RMSD bond angle0.973
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0222)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]86.2403.625
High resolution limit [Å]3.5003.500
Rmerge0.1552.184
Rmeas0.0622.379
Number of reflections107081008
<I/σ(I)>6.490.8
Completeness [%]99.6100
Redundancy6.26.4
CC(1/2)0.9970.322
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP29822% PEG 4000 100 mM MgCl2 100 mM Hepes pH 7.0

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PDB entries from 2024-05-15

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