7JH6
De novo designed two-domain di-Zn(II) and porphyrin-binding protein
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.3.1 |
Synchrotron site | ALS |
Beamline | 8.3.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-01-20 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 1.11583 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 172.478, 27.825, 188.494 |
Unit cell angles | 90.00, 117.16, 90.00 |
Refinement procedure
Resolution | 86.240 - 3.500 |
R-factor | 0.26167 |
Rwork | 0.261 |
R-free | 0.28319 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | Designed model |
RMSD bond length | 0.005 |
RMSD bond angle | 0.973 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0222) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 86.240 | 3.625 |
High resolution limit [Å] | 3.500 | 3.500 |
Rmerge | 0.155 | 2.184 |
Rmeas | 0.062 | 2.379 |
Number of reflections | 10708 | 1008 |
<I/σ(I)> | 6.49 | 0.8 |
Completeness [%] | 99.6 | 100 |
Redundancy | 6.2 | 6.4 |
CC(1/2) | 0.997 | 0.322 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 298 | 22% PEG 4000 100 mM MgCl2 100 mM Hepes pH 7.0 |