7GAH
PanDDA analysis group deposition -- Crystal Structure of MAP1LC3B in complex with Z2033637875
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I04-1 |
Synchrotron site | Diamond |
Beamline | I04-1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2023-02-09 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.92124 |
Spacegroup name | P 43 |
Unit cell lengths | 61.200, 61.200, 35.270 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 30.580 - 1.900 |
R-factor | 0.2008 |
Rwork | 0.199 |
R-free | 0.25410 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 8q53 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.628 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.9) |
Phasing software | REFMAC |
Refinement software | REFMAC (5.8.0267) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 30.600 | 30.600 | 1.950 |
High resolution limit [Å] | 1.900 | 8.500 | 1.900 |
Rmerge | 0.127 | 0.054 | 2.878 |
Rmeas | 0.133 | 0.057 | 2.985 |
Rpim | 0.038 | 0.017 | 0.787 |
Total number of observations | 138579 | 1261 | 11039 |
Number of reflections | 10488 | 124 | 771 |
<I/σ(I)> | 15 | 37 | 1 |
Completeness [%] | 100.0 | 98.1 | 100 |
Redundancy | 13.2 | 10.2 | 14.3 |
CC(1/2) | 0.997 | 0.998 | 0.365 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 4.7 | 293 | 36% PEG 8000, 0.1M acetate pH 4.7 |