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7FFP

Crystal structure of di-peptidase-E from Xenopus laevis

Replaces:  7C9D
Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsRRCAT INDUS-2 BEAMLINE PX-BL21
Synchrotron siteRRCAT INDUS-2
BeamlinePX-BL21
Temperature [K]100
Detector technologyCCD
Collection date2019-06-07
DetectorRAYONIX MX-225
Wavelength(s)0.97949
Spacegroup nameC 1 2 1
Unit cell lengths82.666, 42.150, 75.680
Unit cell angles90.00, 118.24, 90.00
Refinement procedure
Resolution29.220 - 1.800
R-factor0.1884
Rwork0.187
R-free0.22290
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6a4s
Data reduction softwareXDS
Data scaling softwareAimless (0.7.4)
Phasing softwarePHASER
Refinement softwarePHENIX (1.19)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]41.19041.1901.840
High resolution limit [Å]1.8009.0001.800
Rmerge0.0270.0260.070
Rmeas0.0320.0320.089
Rpim0.0170.0180.054
Total number of observations660766141904
Number of reflections20727188902
<I/σ(I)>29.149.79.3
Completeness [%]96.496.471.7
Redundancy3.23.32.1
CC(1/2)0.9990.9960.991
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1MICROBATCH729450 mM Bis-Tris, 200 mM NaNO3, 10 mM CaCl2, 30% PEG 3350

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