7FAZ
Crystal structure of the SARS-CoV-2 main protease in complex with Y180
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2021-05-22 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.978516 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 67.614, 97.956, 101.593 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 19.900 - 2.100 |
R-factor | 0.1928 |
Rwork | 0.190 |
R-free | 0.24280 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 7c7p |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.18.2_3874) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 19.900 | 2.160 |
High resolution limit [Å] | 2.100 | 2.100 |
Rmerge | 0.118 | 0.733 |
Rpim | 0.052 | 0.446 |
Number of reflections | 40029 | 3251 |
<I/σ(I)> | 9.4 | 2.3 |
Completeness [%] | 99.8 | 100 |
Redundancy | 6.3 | |
CC(1/2) | 0.996 | 0.861 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 291 | 0.2 M sodium acetate trihydrate, 0.1 M TRIS hydrochloride pH 8.5, 30% w/v PEG4000 |