7F8P
Crystal structure of the Mycobacterium tuberculosis L,D-transpeptidase-2 (LdtMt2) with new carbapenem drug T203
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-04-02 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 1.0 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 60.799, 94.278, 75.707 |
Unit cell angles | 90.00, 93.14, 90.00 |
Refinement procedure
Resolution | 30.350 - 1.700 |
R-factor | 0.1659 |
Rwork | 0.165 |
R-free | 0.18760 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5du7 |
RMSD bond length | 0.006 |
RMSD bond angle | 0.969 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Refinement software | PHENIX (1.17.1_3660) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 30.350 | 1.730 |
High resolution limit [Å] | 1.700 | 1.700 |
Rmerge | 0.073 | 0.738 |
Rmeas | 0.082 | 0.823 |
Rpim | 0.036 | 0.364 |
Number of reflections | 2095305 | 4434 |
<I/σ(I)> | 23.7 | 3.4 |
Completeness [%] | 97.4 | 95.9 |
Redundancy | 5 | 5 |
CC(1/2) | 0.970 | 0.852 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 298 | 20% 5000 MME, 200mM Ammonium sulfate |