7EI5
GNRA tetraloop receptor motif composed of RNA and DNA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PHOTON FACTORY BEAMLINE AR-NE3A |
Synchrotron site | Photon Factory |
Beamline | AR-NE3A |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-06-18 |
Detector | DECTRIS PILATUS3 S 2M |
Wavelength(s) | 1.0 |
Spacegroup name | H 3 |
Unit cell lengths | 83.220, 83.220, 67.164 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 30.440 - 2.900 |
R-factor | 0.1748 |
Rwork | 0.172 |
R-free | 0.19920 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4fnj |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX (1.17.1) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 30.440 | 30.440 | 2.970 |
High resolution limit [Å] | 2.900 | 12.960 | 2.900 |
Rmerge | 0.063 | 0.037 | 0.286 |
Rmeas | 0.079 | 0.049 | 0.366 |
Total number of observations | 20349 | ||
Number of reflections | 7623 | 75 | 568 |
<I/σ(I)> | 13.75 | 29.37 | 3.3 |
Completeness [%] | 98.8 | 93.8 | 95 |
Redundancy | 2.669 | 2.533 | 2.431 |
CC(1/2) | 0.995 | 0.998 | 0.872 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | sodium cacodylate, MPD, hexammine cobalt, strontium chloride |