7EFN
Crystal structure of the gastric proton pump K791S/E820D/Y340N/E936V in (BYK)E2BeF state
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | SPRING-8 BEAMLINE BL41XU |
| Synchrotron site | SPring-8 |
| Beamline | BL41XU |
| Temperature [K] | 80 |
| Detector technology | PIXEL |
| Collection date | 2020-10-15 |
| Detector | DECTRIS EIGER X 16M |
| Wavelength(s) | 1.0 |
| Spacegroup name | P 31 2 1 |
| Unit cell lengths | 105.940, 105.940, 372.010 |
| Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
| Resolution | 48.710 - 3.200 |
| R-factor | 0.2704 |
| Rwork | 0.268 |
| R-free | 0.30810 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 5ylv |
| RMSD bond length | 0.004 |
| RMSD bond angle | 0.895 |
| Data reduction software | XDS |
| Data scaling software | XDS |
| Phasing software | PHASER |
| Refinement software | PHENIX (1.19_4092) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 48.710 | 3.300 |
| High resolution limit [Å] | 3.200 | 3.200 |
| Rmerge | 0.033 | 2.600 |
| Rpim | 0.033 | 2.600 |
| Number of reflections | 41073 | 1017 |
| <I/σ(I)> | 9.15 | 0.28 |
| Completeness [%] | 81.7 | 25.24 |
| Redundancy | 2 | |
| CC(1/2) | 1.000 | 0.160 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 293 | 10 glycerol, 20% PEG 2000 MME, 0.2M RbCl, 3% methylpentanediol, 5mM beta-mercaptoethanol |






