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7EA7

crystal structure of NAP1 LIR in complex with GABARAP

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRF BEAMLINE BL17U1
Synchrotron siteSSRF
BeamlineBL17U1
Temperature [K]100
Detector technologyPIXEL
Collection date2020-06-24
DetectorDECTRIS EIGER X 16M
Wavelength(s)0.97915
Spacegroup nameP 21 21 21
Unit cell lengths35.096, 73.584, 103.359
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution25.840 - 2.690
R-factor0.2141
Rwork0.211
R-free0.27050
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)7bv4
RMSD bond length0.004
RMSD bond angle0.698
Data reduction softwareXDS
Data scaling softwareXDS
Phasing softwarePHENIX
Refinement softwarePHENIX (1.14_3260)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]36.7902.820
High resolution limit [Å]2.6902.690
Number of reflections79401025
<I/σ(I)>21.9
Completeness [%]100.0
Redundancy12.4
CC(1/2)0.9990.808
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP2890.3 M sodium nitrate, 0.3 M sodium phosphate dibasic, 0.3 M ammonium sulfate, 0.1 M bicine-tris pH 8.5, 25% v/v MPD, 25% PEG1000, 25% w/v PEG3350

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