7E4P
Crystal structure of tubulin in complex with Ansamitocin P3
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL19U1 |
Synchrotron site | SSRF |
Beamline | BL19U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-04-15 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97908 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 105.399, 158.569, 181.760 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 47.248 - 2.400 |
R-factor | 0.2131 |
Rwork | 0.213 |
R-free | 0.22940 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4tv8 |
RMSD bond length | 0.003 |
RMSD bond angle | 0.736 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.8.4_1496) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.460 |
High resolution limit [Å] | 2.396 | 5.920 | 2.400 |
Rmerge | 0.131 | 0.083 | 0.768 |
Rmeas | 0.143 | 0.090 | 0.847 |
Rpim | 0.055 | 0.035 | 0.348 |
Number of reflections | 119194 | 8415 | 7439 |
<I/σ(I)> | 5.1 | ||
Completeness [%] | 99.4 | 99.8 | 94.3 |
Redundancy | 6.6 | 6.5 | 5.4 |
CC(1/2) | 0.991 | 0.703 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.7 | 293 | 6% poly(ethylene glycol) 4000, 8% glycerol, 0.1 M MES (pH 6.7), 30 mM CaCl2, 30 mM MgCl2 |