7E44
Crystal structure of NudC complexed with dpCoA
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2019-12-13 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9792 |
Spacegroup name | P 1 |
Unit cell lengths | 60.837, 61.651, 93.893 |
Unit cell angles | 97.24, 100.39, 111.14 |
Refinement procedure
Resolution | 90.330 - 2.000 |
R-factor | 0.2347 |
Rwork | 0.234 |
R-free | 0.24810 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5isy |
RMSD bond length | 0.014 |
RMSD bond angle | 1.407 |
Data reduction software | DIALS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.19.1_4122) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 90.330 | 2.050 |
High resolution limit [Å] | 2.000 | 2.000 |
Rmerge | 0.051 | 0.101 |
Rmeas | 0.072 | 0.143 |
Rpim | 0.051 | 0.101 |
Number of reflections | 80253 | 5889 |
<I/σ(I)> | 7.5 | 4.2 |
Completeness [%] | 97.0 | |
Redundancy | 1.8 | |
CC(1/2) | 0.980 | 0.976 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 291.15 | PEG 3350, Ammonium succinate |