Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7DVA

Structure of wild type Bt4394, a GH20 family sulfoglycosidase, in complex with 6S-GlcNAc

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsSSRF BEAMLINE BL17U1
Synchrotron siteSSRF
BeamlineBL17U1
Temperature [K]100
Detector technologyCCD
Collection date2019-04-28
DetectorADSC QUANTUM 315r
Wavelength(s)0.979191
Spacegroup nameP 1 21 1
Unit cell lengths49.500, 125.596, 84.640
Unit cell angles90.00, 90.63, 90.00
Refinement procedure
Resolution50.483 - 1.550
Rwork0.142
R-free0.18440
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3rcn
RMSD bond length0.005
RMSD bond angle1.217
Data reduction softwareXDS
Refinement softwareREFMAC (5.8.0258)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]70.1901.580
High resolution limit [Å]1.5501.550
Rmerge0.0971.005
Number of reflections1452687086
<I/σ(I)>11.52
Completeness [%]97.4
Redundancy6.8
CC(1/2)0.9960.584
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP28210 mM of 4MU-6S-GlcNAc with 10 mg/mL protein in the buffer of 25 mM PH 8.0, =300 mM NaCl was mixed with 0.1 M BICINE, pH 8.5, 20 % (w/v) PEG 10000 at 1:1 to carry on co-crystallization.

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon