7DP2
Crystal structure of FMN and NADPH-dependent nitroreductase NfnB mutant Y88F derived from sphigopyxis sp. strain HMH
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | PAL/PLS BEAMLINE 7A (6B, 6C1) |
Synchrotron site | PAL/PLS |
Beamline | 7A (6B, 6C1) |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2020-11-11 |
Detector | ADSC QUANTUM 270 |
Wavelength(s) | 0.97933 |
Spacegroup name | P 43 21 2 |
Unit cell lengths | 90.436, 90.436, 101.679 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 33.787 - 2.400 |
R-factor | 0.192250261313 |
Rwork | 0.185 |
R-free | 0.25684 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2wzw |
RMSD bond length | 0.009 |
RMSD bond angle | 1.273 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | HKL-2000 |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.490 |
High resolution limit [Å] | 2.400 | 2.400 |
Number of reflections | 17096 | 1665 |
<I/σ(I)> | 20.2 | |
Completeness [%] | 99.9 | |
Redundancy | 14 | |
CC(1/2) | 0.994 | 0.454 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 295 | 0.1M Tris pH7.0, 40% PEG 300, 8% PEG 1000 |